Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs199661327 | chr15:24504789 | AACC/A | 0.000139 | 213 | 17 | 14.8 | 9.48 | KM Plot |
| KIRP | rs199687684 | chr10:63418639 | C/CGG | 0 | 207 | 18.87 | 6.83 | 3.93 | KM Plot |
| KIRP | rs199688612 | chr16:20442168 | AGAG/A | 0.000361 | 211 | 16.45 | 16.72 | 1.73 | KM Plot |
| KIRP | rs199774269 | chr10:75538843 | A/AC | 0 | 212 | 15.88 | 18 | 4.07 | KM Plot |
| KIRP | rs1997865 | chr1:29643881 | A/T | 0.000174 | 214 | 10.3 | 19.4 | 14.53 | KM Plot |
| KIRP | rs2001310 | chr17:80792589 | G/A | 4.01E-5 | 210 | 15.33 | 18 | 15.15 | KM Plot |
| KIRP | rs200148647 | chr14:59864626 | TA/T | 0.000124 | 212 | 15.88 | 16.53 | 6.63 | KM Plot |
| KIRP | rs200163805 | chr16:20462651 | T/C | 0.000386 | 211 | 16.43 | 13.6 | 5.88 | KM Plot |
| KIRP | rs200331812 | chr15:24508578 | C/T | 6.5E-5 | 208 | 17.02 | 15.07 | 10.23 | KM Plot |
| KIRP | rs200465356 | chr16:20442103 | A/AGGAAAGAAGGAAG | 0.00038 | 210 | 16.47 | 16.72 | 1.73 | KM Plot |
| KIRP | rs2005090 | chr8:30096027 | G/A | 6.75E-7 | 210 | 14.53 | 18.98 | 0.07 | KM Plot |
| KIRP | rs200718608 | chr14:59977843 | AC/A | 0.000205 | 213 | 16.43 | 18 | 11.2 | KM Plot |
| KIRP | rs200718971 | chr14:59912942 | CTG/C | 7.34E-5 | 211 | 16.43 | 17.52 | 6.63 | KM Plot |
| KIRP | rs2007776 | chr1:212693477 | C/T | 9.72E-10 | 214 | 16.47 | 16.53 | 10.63 | KM Plot |
| KIRP | rs200783303 | chr10:63418640 | TA/T | 0 | 207 | 18.87 | 6.83 | 3.93 | KM Plot |